Regional Specialised Collection of Alkanotrophic Microorganisms

Publications

• Ivshina, I.B. Current situation and challenges of specialized microbial resource centres in Russia. Microbiology. 2012. 81(5): 509–516. DOI: 10.1134/S0026261712050098
• Ivshina, I.B., Kuyukina, M.S. Turning Russian specialized microbial culture collections into resource centers for biotechnology. Trends in Biotechnology. 2013.  31(11): 609−611. DOI: 10.1016/j.tibtech.2013.08.002
• Kuyukina, M.S., Ivshina, I.B., Kamenskikh, T.N., Bulicheva, M.V., Stukova, G.I. Survival of cryogel-immobilized Rhodococcus cells in crude oil-contaminated soil and their impact on biodegradation efficiency. International Biodeterioration and Biodegradation. 2013.  84: 118–125. DOI: 10.1016/j.ibiod.2012.05.03.
• Ivshina, I.B., Kuyukina, M.S., Krivoruchko, A.V., Plekhov, O.A., Naimark, O.B., Podorozhko, E.A., Lozinsky, V.I. Biosurfactant-enhanced immobilization of hydrocarbon-oxidizing Rhodococcus ruber on sawdust. Applied Microbiology and Biotechnology. 2013. 97(12): 5315–5327. DOI: 10.1007/s00253-013-4869-y
• Kuyukina, M.S., Ivshina, I.B., Serebrennikova, M.K., Rubtsova, E.V., Krivoruchko, A.V. Simultaneous species-specific PCR detection and viability testing of poly(vinyl alcohol) cryogel-entrapped Rhodococcus spp. after their exposure to petroleum hydrocarbons. Journal of Microbiological Methods. 2013. 94: 135–140. DOI: 10.1016/j.mimet.2013.05.016
• Ivshina, I.B., Kuyukina, M.S., Krivoruchko, A.V., Barbe, V., Fischer, C. Draft genome sequence of propane- and butane-oxidizing actinobacterium Rhodococcus ruber IEGM 231. Genome Announcements. 2014. 2(6). DOI: 10.1128/genomeA.01297-14
• Declerck, S., Willems, A., van der Heijden, M.G.A., Varese, G.C., Turkovskaya, O.V., Evtushenko, L.I., Ivshina, I.B., Desmeth, P. PERN: an EU-Russia initiative for rhizosphere microbial resources. Trends in Biotechnology. 2015. 33(7): 377−380. DOI: 10.1016/j.tibtech.2015.03.005
• Kuyukina, M.S., Ivshina, I.B., Baeva, T.A., Kochina, O.A., Gein, S.V., Chereshnev, V.A. Trehalolipid biosurfactants from nonpathogenic Rhodococcus actinobacteria with diverse immunomodulatory activities. New Biotechnology. 2015. 32(3): 559−568. DOI:10.1016/j.nbt.2015.03.006
• Ivshina, I., Kostina, L., Krivoruchko, A., Kuyukina, M., Peshkur, T., Anderson, P., Cunningham, C. Removal of polycyclic aromatic hydrocarbons in soil spiked with model mixtures of petroleum hydrocarbons and heterocycles using biosurfactants from Rhodococcus ruber IEGM 231. Journal of Hazardous Materials. 2016. 312: 8–17. DOI 10.1016/j.jhazmat.2016.03.007
• Kylosova, T.I., Elkin, A.A., Grishko, V.V., Ivshina, I.B. Biotransformation of prochiral sulfides into (R)-sulfoxides using immobilized Gordonia terrae IEGM 136 cells. Journal of Molecular Catalysis B: Enzymatic. 2016. 123: 8−13. DOI:10.1016/j.molcatb.2015.10.014
• Kuyukina, M.S., Ivshina, I.B., Korshunova, I.O., Stukova, G.I., Krivoruchko, A.V. Diverse effects of a biosurfactant from Rhodococcus ruber IEGM 231 on the adhesion of resting and growing bacteria to polystyrene. AMB Express. 2016. 6(14). DOI: 10.1186/s13568-016-0186-z
• Ivshina, I.B., Kuyukina, M.S., Krivoruchko, A.V. Hydrocarbon-oxidizing bacteria and their potential in eco-biotechnology and bioremediation // In: Microbial Resources: From Functional Existence in Nature to Industrial Applications. Editor: I. Kurtböke, Elsevier. 2017. P. 121−148. ISBN 978-0-12-804765-1. DOI:10.1016/B978-0-12-804765-1.00006-0
• Kuyukina, M.S., Ivshina, I.B., Serebrennikova, M.K., Krivoruchko, A.V., Korshunova, I.O., Peshkur, T.A., Cunningham, C.J. Oilfield wastewater biotreatment in a fluidized-bed bioreactor using co-immobilized Rhodococcus cultures. Journal of Environmental Chemical Engineering. 2017. 5(1): 1252–1260. DOI: 10.1016/j.jece.2017.01.043 2213-3437
• Tarasova, E.V., Grishko, V.V., Ivshina, I.B. Cell adaptations of Rhodococcus rhodochrous IEGM 66 to betulin biotransformation. Process Biochemistry. 2017. 52: 1−9. DOI 10.1016/j.procbio.2016.10.003
• Ivshina, I.B., Kuyukina, M.S. Specialized microbial resource centers: a driving force of the growing bioeconomy. In: Microbial Resource Conservation. Editors: Sushil K. Sharma and Ajit Varma / Soil Biology. Springer, 2018. V. 54. P. 111−140. ISBN 978-3-319-96970-1. DOI: 10.1007/978-3-319-96971-8_4
• Cheremnykh, K.M., Luchnikova, N.A., Grishko, V.V., Ivshina, I.B. Bioconversion of ecotoxic dehydroabietic acid using Rhodococcus actinobacteria. Journal of Hazardous Materials. 2018. 346:  103–112. DOI: 10.1016/j.jhazmat.2017.12.025
• Krivoruchko, A.V., Iziumova, A.Yu., Kuyukina, M.S., Plekhov, O.A., Naimark, O.B., Ivshina, I.B. Adhesion of Rhodococcus ruber IEGM 342 to polystyrene studied using contact and non-contact temperature measurement techniques. Applied Microbiology and Biotechnology. 2018.  102(19): 8525–8536. DOI 10.1007/s00253-018-9297-6
• Ivshina, I.B., Tyumina, E.A., Kuzmina, M.V., Vikhareva, E.V. Features of diclofenac biodegradation by Rhodococcus ruber IEGM 346. Scientific Reports. 2019. 9: 9159. DOI: 10.1038/s41598-019-45732-9
• Krivoruchko, А.V., Kuyukina, M.S, Ivshina, I.B. Advanced Rhodococcus biocatalysts for environmental biotechnologies. Catalysts. 2019. 9(3): 236. DOI: 10.3390/catal9030236
• Kuyukina, M.S., Ivshina, I.B. Bioremediation of contaminated environments using Rhodococcus. In: Biology of Rhodococcus / Ed. H.M. Alvarez. Springer Nature, 2019. Microbiology Monographs. V. 16. Р. 231‒270. DOI: 10.1007/978-3-030-11461-9_9
• Kuyukina, M.S., Ivshina, I.B. Production of trehalolipid biosurfactants by Rhodococcus. In: Biology of Rhodococcus / Ed. H.M. Alvarez. Springer Nature, 2019. Microbiology Monographs. V. 16. Р. 271‒298. DOI:10.1007/978-3-030-11461-9_10
• Ivshina, I.B., Kuyukina, M.S., Krivoruchko, A.V., Tyumina, E.A. Responses to ecopollutants and pathogenization risks of saprotrophic Rhodococcus species. Pathogens. 2021. 10: 974. DOI: 10.3390/pathogens10080974
• Kuyukina, M.S., Ivshina, I.B., Krivoruchko, A.V., Peshkur, T.A., Cunningham, C.J. Improvement of jet fuel contaminated water treatment in a fluidized-bed bioreactor by introducing nickel nanoparticles. International Biodeterioration & Biodegradation. 2021: 105308. DOI: 10.1016/j.ibiod.2021.105308
• Ivshina, I.B., Tyumina, E.A., Bazhutin, G.A., Vikhareva, E.V. Response of Rhodococcus cerastii IEGM 1278 to toxic effect of ibuprofen. PLoS ONE. 2021. 16(11): e0260032. DOI: 10.1371/journal.pone.0260032
• Ivshina, I., Bazhutin, G., Tyumina, E. Rhodococcus strains as a good biotool for neutralizing pharmaceutical pollutants and obtaining therapeutically valuable products: Through the past into the future. Frontiers in Microbiology. 2022. 13: 967127. DOI:  10.3389/fmicb.2022.967127
• Kuyukina, M.S., Makarova, M.V., Pistsova, O.N., Glebov, G.G., Osipenko, M.A., Ivshina, I.B. Exposure to metal nanoparticles changes zeta potentials of Rhodococcus cells. Heliyon. 2022. 8: e11632. DOI: 10.1016/j.heliyon.2022.e11632
• Ivshina, I.B., Tyumina, E.A., Bazhutin, G.A., Polygalov, M.A., Krivoruchko, A.V. Draft genome sequence of a ketoprofen degrader Rhodococcus erythropolis IEGM 746. Microbiology Resource Announcements. 2022. e e01070-22. DOI: 10.1128/MRA.01070-22
• Ivshina, I.B., Bazhutin, G.A., Tyan, S., Polygalov, M.A., Subbotina, M.D., Tyumina, E.A. Cellular modifications of rhodococci exposed to separate and combined effects of pharmaceutical pollutants. Microorganisms. 2022. 10: 1101.  DOI: 10.3390/ microorganisms10061101
• Ivshina, I.B., Luchnikova, N.A., Maltseva, P.Yu., Ilyina, I.V., Volcho, K.P., Gatilov, Yu.V., Korchagina, D.V., Kostrikina, N.A., Sorokin, V.V., Mulyukin, A.L., Salakhutdinov, N.F. Biotransformation of (–)-isopulegol by Rhodococcus rhodochrous. Pharmaceuticals. 2022. 15: 964. DOI: 10.3390/ph15080964
• Ivshina, I.B., Krivoruchko, A.V., Kuyukina M.S., Peshkur T.A., Cunningham C.J.  Adhesion of Rhodococcus bacteria to solid hydrocarbons. Scientific Reports. 2022. 12: 21559. DOI: 10.1038/s41598-022-26173-3
• Kuyukina, M.S., Makarova, M.V., Ivshina, I.B., Kazimov, K.P., Osovetsky, B.M. Biosynthesis and characterization of gold nanoparticles produced using Rhodococcus actinobacteria at elevated chloroauric acid concentrations. International Journal of Molecular Sciences. 2022. 23: 12939. DOI: 10.3390/ ijms23211293
• Kuyukina, M.S., Glebov, G.G., Ivshina, I.B. Effects of nickel nanoparticles on Rhodococcus surface morphology and nanomechanical properties. Nanomaterials. 2022. 12(6): 951.  DOI: 10.3390/nano12060951
• Luchnikova, N.A., Grishko,, V.V., Kostrikina, N.A., Sorokin, V.V., Mulyukin, A.L., Ivshina, I.B. Biotransformation of oleanolic acid using Rhodococcus rhodochrous IEGM 757. Catalysts. 2022.  12: 1352. DOI: 10.3390/catal12111352
• Krivoruchko, A.V., Kuyukina, M.S., Peshkur, T.A., Cunningham, C.J., Ivshina, I.B. Rhodococcus strains from the Specialized Collection of Alkanotrophs for biodegradation of aromatic compounds. Molecules. 2023. 28: 2393. DOI: 10.3390/molecules28052393
• Luchnikova, N.A., Tarasova, E.V., Grishko, V.V., Ivshina, I.B. Rhodococcus rhodochrous IEGM 1360, an effective biocatalyst of C3 oxidative transformation of oleanane triterpenoids. Microbiology. 2023. 92(2): 204−214.